CDK.SF.NET

CalculateAccurateMass

ab.wur.nl

xcmsFindPeaks

antirrhinum.net

getDragonAlleleDescription
getDragonLociByKeyword
DragonDB_TBLASTN
getDragonBlastText
getDragonSimpleAnnotatedImages
getDragonAlleleLocus
getDragonLocusAlleles
getDragonAllelesByKeyword
getDragonSequenceLocus
getDragonMapBySeqID
parseDragonDBBlastText
getDragonGeneticMapByMapID

arabidopsis.info

getNASCstockDescriptionByStockCode
getArabidopsisImageByKeyword
getArabidopsisGrowthRequirementsByNASCstockCode
NASCArraysGeneswingerByAGAffymetrixProbeSetID
getArabidopsisGrowthRequirementsByNASCstockName
getArabidopsisGrowthRequirementsByABRCcode
getNASCArraysReferenceNumberByNASCstockCode
getArabidopsisImageByAGI
NASCArraysGeneswingerByATH1AffymetrixProbeSetID
getMAS5normalisedDataByNASCArraysSlide
getArabidopsisImageByNASCstockCode
NASCArraysGeneswingerByAGI
getNASCArraysExpDescriptionByNASCArraysSlide
getArabidopsisHabitatByNASCstockName
getNASCArraysSlideByReferenceNumber
getNASCArraysSlideByExperimentName
getNASCphenotypeByNASCstockCode
getNASC_codebyAGI_locus
getNASCArraysExpDescriptionByName
getNASCArraysExpDescriptionByNASCstockCode
getNASCArraysReferenceNumberByExperimentName
getNASCArraysReferenceNumberBySlideName
getNASCstockNameByAGI
getNASCphenotypeByDonorNumber
getNASCArraysSlideByNASCstockCode
getNASCphenotypeByEMBL
getNASCstockDescriptionByStockName
getNASCphenotypeByInsertNumber
getNASCphenotypeByMutagen
getNASCcollectionByDonorNumber
getNASCstockDescriptionByDonorNumber
getNASCstockDescriptionByNASCinsertNumber
getNASCstockAvailabilityByDonorNumber
getNASCstockAvailabilityByNASCstockCode
getNASCstockAvailabilityByNASCstockName
getNASCinsertByAGI
getNASCdonorNameByEMBL
getNASCdonorNameByNASCstockName
getNASCdonorNameByNASCstockCode
getNASCdonorNameByABRCcode
getNASCdonorNameByDonorNumber
getNASCphenotypeByEcotypeName
getNASCphenotypeByAGI
getNASCstockCodeByAGI
getArabidopsisSeedTypeByNASCstockName
getArabidopsisSeedTypeByNASCinsertNumber
getArabidopsisSeedTypeByNASCstockCode
getArabidopsisSeedTypeByNASCdonorNumber
getArabidopsisPublicationsByNASCdonorNumber
getArabidopsisPublicationsByNASCstockCode
getArabidopsisPublicationsByNASCinsertNumber
getArabidopsisPublicationsByNASCstockName
getEMBLaccessionByABRCcode
getEMBLaccessionByAllele
getEMBLaccessionByDonorName
getEMBLaccessionByDonorNumber
getEMBLaccessionByInsertNumber
getEMBLaccessionByKeyword
getEMBLaccessionByLocus
getEMBLaccessionByMutagen
getEMBLaccessionByNASCseedType
getEMBLaccessionByNASCstockCode
getEMBLaccessionByNASCstockName
getArabidopsisLocusByAllele
getArabidopsisLocusByEMBL
getArabidopsisLocusByNASCstockCode
getArabidopsisLocusByNASCstockName
getArabidopsisAlleleByLocus
getArabidopsisAlleleByNASCstockCode
getArabidopsisAlleleByNASCstockName
getArabidopsisAlleleByABRCcode
getArabidopsisAlleleByEMBL
getNASCdonorNameByMutagen
getNASCdonorNameByInsertNumber
getNASCstockNameByABRCcode
getNASCstockNameByAllele
getNASCstockNameByDonorName
getNASCstockNameByDonorNumber
getNASCstockNameByEcotypeName
getNASCstockNameByEMBL
getNASCstockNameByInsertNumber
getNASCstockNameByKeyword
getNASCstockNameByLocus
getNASCstockNameByMutagen
getNASCstockNameByNASCstockCode
getNASCstockNameBySeedType
getArabidopsisEcotypeByEMBL
getArabidopsisEcotypeByInsertNumber
getArabidopsisEcotypeByMutagen
getArabidopsisEcotypeByNASCdonorNumber
getArabidopsisEcotypeByNASCstockCode
getArabidopsisMutagenByAllele
getArabidopsisMutagenByEMBL
getArabidopsisMutagenByInsertNumber
getArabidopsisMutagenByLocus
getArabidopsisMutagenByNASCdonorNumber
getArabidopsisMutagenByNASCstockCode
getArabidopsisMutagenByNASCstockName
getNASCinsertByABRCcode
getNASCinsertByDonorNumber
getNASCinsertByEMBL
getNASCinsertByLocus
getNASCinsertByNASCstockCode
getNASCinsertByNASCstockName
getNASCstockCodeByAllele
getNASCstockCodeByCollection
getNASCstockCodeByDonorName
getNASCstockCodeByDonorNumber
getNASCstockCodeByEcotypeName
getNASCstockCodeByEMBL
getNASCstockCodeByInsertNumber
getNASCstockCodeByKeyword
getNASCstockCodeByLocus
getNASCstockCodeByMutagen
getNASCstockCodeByStockName
getNASCstockCodeByABRCcode
getNASCphenotypeByABRCcode
getNASCphenotypeByKeyword
getNASCphenotypeByLocus
getNASCphenotypeBySeedType
getNASCphenotypeByNASCstockName
getNASCphenotypeByAllele
getNASCphenotypeByDonorName
getArabidopsisHabitatByNASCstockCode
getArabidopsisImageByNASCstockName
getArabidopsisImageByNASCinsertNumber
getArabidopsisImageByAllele
getArabidopsisImageByNASCdonorNumber
getArabidopsisImageByNASCdonorName
getArabidopsisImageByNASCecotypeName
getArabidopsisImageByABRCcode
getNASCArraysExpDescriptionByReferenceNumber
getNASCArraysExpDescriptionByMGEDExperimentDesignType

arabidopsis.med.ohio-state.edu

getAGRISTFFamilyNameByAGI

arabidopsis.org

Locus2GeneAliases
Locus2GoIDs
Locus2Publications
Locus2SpliceVariants
AGILocusList

arexdb.org

getGOCollection
getAREXGFPImageCollection

asrp.cgrb.oregonstate.edu

ASRP_smallRNA_hit_in_IGR_upstream_of_AGI
ASRP_miRNA_target_in_AGI
ASRP_smallRNA_sequence_from_chromosomal_AGI
ASRP_smallRNA_hit_in_IGR_downstream_of_AGI

atidb.org

getInsertionsWithOffsetAsGFFByAGICode
getTranscriptSequenceByTranscriptCode
getGOAccsByAGICode
getABRCCodeByATHNumber
getTranscriptCodesByAGICode
getGOTermsByAGICode
getInsertionsAsGFFByAGICode
getNASCCodeByATHNumber
getInsertionNamesByAGICode
getAGICodesByGOAcc
getPrimer3PrimersForSequence
getTargetPResultByTranscriptCode
getPubmedIDsByAGICode
getSynonymsFromAGICode
getSubSeqFromGFFCoords
getTranscriptSequencesByAGICode
getInterproResultsForAGICode

bar.utoronto.ca

getAGI_SubCellLocalisationImage
getAGI_eFPImage

bibiserv.techfak.uni-bielefeld.de

RNAShapes_ShapeFolding
RNAShapes_SuboptimalShapeFolding
RNAShapes_ShapeProbabilities
RNAShapes_Sampling
RNAShapes_ConsensusShapes

bioinfo.cipf.es

runDifferentialExpressionTest
displayDifferentialExpressionTest

bioinfo.genopole-toulouse.prd.fr

PsiBlastFromAlignment
BuildHmm
ScanHamapFamilies
SeqLogo
GetProteinSequence
TBlastNPlantsEST
ScanUpstreamWithHmm
ImgaGetTigrXMLEntriesFromKeyword
MultalinMultiFasta
MotifSamplerGFFtoMultiFasta
MSF2FASTA
GetUpstreamSequence
RnaScan
InterProScanResult_RawToInterProScanResult
ImgaBlastp
ClustalWFastaCollection
FASTA2FASTA_NA_multi
ListToObjectCollection
GetCDSSequence
PhylogeneticProfiles
GetHamapFamily
MemeNucleic
MemeProteic
FASTA_AA_multi2FASTA_AA_COLLECTION
EMBOSSiep
EMBOSSpepwindow
EMBOSShmoment
EMBOSSbacktranseq
EMBOSSsigcleave
EMBOSShelixturnhelix
EMBOSScharge
EMBOSSpepstats
EMBOSSpepnet
EMBOSSpepcoil
EMBOSSemowse
EMBOSSpepwheel
EMBOSSpalindrome
EMBOSSetandem
EMBOSScodcmp
EMBOSSequicktandem
EMBOSScusp
EMBOSSeinverted
EMBOSSchips
EMBOSSmarscan
EMBOSSchecktrans
EMBOSSdigest
EMBOSSoddcomp
ImgaGetSequencesFromAccession
InterProScanResultToAutomaticAnnotation
TigrXML2HTML
EMBOSSfreak
ClustalWMultiFasta
EMBOSSplotorf
EMBOSScai
FASTA2FASTA_NA
ImgaGetMensExpressionPattern
MultalinFastaCollection
EMBOSStmap
FASTA2FASTA_AA
FASTA2FASTA_AA_multi
EMBOSScompseq
EMBOSSgarnier
EMBOSSprettyplot
Gepeto
EMBOSSgetorf
EMBOSSprettyseq

bioinfo.icapture.ubc.ca

getSHoundDNAFromOrganism
getCddConservedDomainIdsByGi
getCogsConservedDomainIdsByGi
getKeggIdsByKeggPathway
getSHoundGODBGetParentOf
getGeneInformationByEntrezGeneID
convertSnp2EntrezGeneID
getMESHID
MOBYSHoundFindAccEMBL2gi
getMESHIDs
getTaxParent
MOBYSHoundGetGenBankGFF
getMESH_Children_by_ID
getJpegFromAnnotatedImage
MOBYSHoundGetGenBankff
getMESHTerm
getCddConservedProteinDomainIdsByLabel
getCogsConservedProteinDomainIdsByLabel
getConservedDomainLabelFromDomainId
convertIdentifier2KeggID
convertKeggGeneId2ProtId
extractSequenceRecordsFromFasta
extractSequenceRecordsFromFastaIntoCollection
GeneMarkHMM_Arabidopsis
Sputnik
getTaxNameFromTaxID
snp2Frequencies
getPubChemSubstanceIdByKeggCompound
getSnpsBySwissProtId
FASTA2HighestGenericSequenceObject
getSHoundProteinsFromTaxID
getColoredKeggPathwayOfKeggIds
getGisBySmartConservedDomainId
getSHoundNeighboursFromGi
getSmartConservedProteinDomainIdsByLabel
getKeggCompoundsOnKeggPathway
ExplodeOutCrossReferences
getUniprotIdentifierByGeneName
MOBYSHoundGetGenBankFasta
getKeggPathwayAsGif
getTaxChildNodes
getSdfForPubChemSubstance
getGoTermAssociations
getKeggPathwaysByKeggID
getSHoundProteinFromOrganism
GenericSequence2FASTA
getSHoundGODBGetChildrenOf
getSHound3DNeighboursFromGi
MOBYSHoundGetGenBankWhateverSequence
getSmartConservedDomainIdsByGi
getUniprotIdentifiersByKeyword
getUniprotDescriptorsByKeyword
getMESH_Children_by_Term
GeneticMap2GFF
getGisByCogsConservedDomainId
getGisByCddConservedDomainId
getPfamConservedProteinDomainIdsByLabel
getPfamConservedDomainIdsByGi
getGisByPfamConservedDomainId
MOBYSHoundGODBGetAllChildren
MOBYSHoundGODBGetAllAncestors
MOBYSHoundGODBGetChildrenOf
MOBYSHoundGODBGetParentOf
MOBYSHoundGODBGetRecordByReference
MOBYSHoundGODBGetClassification
MOBYSHoundGODBGetNameByID
getPfamConservedDomainIdsByLocusLinkId
getSmartConservedDomainIdsByLocusLinkId
getCogsConservedDomainIdsByLocusLinkId
getCddConservedDomainIdsByLocusLinkId
MOBYSHoundGiFromGOID
MOBYSHoundGiFromGOIDList
MOBYSHoundGiFromGOIDListAndECode
MOBYSHoundGiFromGOIDAndECode
MOBYSHoundGiFromLocusID
MOBYSHoundGiFromLocusIDList
MOBYSHoundGiFromOMIM
MOBYSHoundGiFromOMIMList
MOBYSHoundGOECodeFromGiAndGOID
MOBYSHoundGOIDFromGi
MOBYSHoundGOIDFromGiList
MOBYSHoundGOIDFromLocusID
MOBYSHoundGOIDFromRedundantGi
MOBYSHoundGOIDFromRedundantGiList
MOBYSHoundPMIDFromGiAndGOID
MOBYSHoundLocusIDFromConservedDomainDbID
MOBYSHoundLocusIDFromGi
MOBYSHoundLocusIDFromGiList
MOBYSHoundLocusIDFromOMIM
MOBYSHoundLocusIDFromGOIDAndECode
MOBYSHoundAllGenomesWithNumProteins
getSHoundDNAFromTaxID
MOBYSHoundGetGenBankVirtSequence
Parse_GeneMarkHMM_HTML
RetrieveGOFromKeywords
getGoTerm
renderGFF
convertKeggGeneId2PDBId
getBase64SnpFrequencyImage
PDB_id2RasMolScript
BIND_IdSearchGetGOTermsByGi
ObjectIntersection
ObjectUnion
BIND_IdSearchGetGOTermsByCdd
BIND_IdSearchGetFastaBySwissProtId
BIND_IdSearchGetFastaByEmblId
BIND_IdSearchGetGOTermsByWormBaseId
BIND_IdSearchGetFastaByTrEmblId
BIND_IdSearchGetGOTermsByCog
BIND_IdSearchGetGOTermsBySwissProtId
BIND_IdSearchGetFastaByCdd
BIND_IdSearchGetFastaByUniGeneId
BIND_IdSearchGetFastaByGi
BIND_IdSearchGetGOTermsByOmimId
BIND_IdSearchGetGOTermsByGenbankId
BIND_IdSearchGetFastaByPirId
BIND_IdSearchGetGOTermsByTairId
BIND_IdSearchGetFastaByCog
BIND_IdSearchGetFastaByPubMedId
BIND_IdSearchGetFastaByGenbankId
BIND_IdSearchGetFastaByPfamId
BIND_IdSearchGetGOTermsBySmartId
BIND_IdSearchGetGOTermsByEnsemblId
BIND_IdSearchGetFastaByUniProtId
BIND_IdSearchGetGOTermsByUniProtId
BIND_IdSearchGetFastaByWormBaseId
BIND_IdSearchGetFastaByOmimId
BIND_IdSearchGetGOTermsByPirId
BIND_IdSearchGetFastaByEnsemblId
BIND_IdSearchGetFastaByEntrezGeneId
BIND_IdSearchGetGOTermsByUniGeneId
BIND_IdSearchGetGOTermsByEntrezGeneId
BIND_IdSearchGetGOTermsByPfamId
BIND_IdSearchGetGOTermsByPubMedId
BIND_IdSearchGetFastaByTairId
BIND_IdSearchGetGOTermsByTrEmblId
BIND_IdSearchGetGOTermsByEmblId
BIND_IdSearchGetFastaBySmartId

bioinfo.inibap.org

GetMGISAccessionList
getAccessionByDescriptors
Get_TropGENE_Distance_Matrix_By_Indices
Get_TropGENE_Nj_Tree
Get_TropGENE_Distance_Matrix
GetAccessionByPassport
draw_NJ_Tree

bioinfo.mpimp-golm.mpg.de

getTrypticPeptideSequenceByAGI

biolit.ucsd.edu

BioLit

biomoby.inibap.org

GetMGISAccession_v2

biomoby.renci.org

Stretcher
WordCount
WordMatch
TrimEST
RegisterSequence
RegisterNucleotideSequence
RegisterAminoAcidSequence
CPGPlot
ExtractAccessions
RevSeq
DiffSeq
LookupSequence
Cai
CPGReport
IsNucleotideSequence
ExtractBlastReportSequences
MegaMerger
Merger
Needle
Neighbor
NewCPGReport
NewCPGSeek
NotSeq
Octanol
OddComp
Palindrome
PatMatMotifs
PepCoil
PepInfo
PepNet
PepStats
PepWheel
PepWindow
PepWindowAll
PlotCon
PlotOrf
PolyDot
Matcher
Splitter
ShowAlign
PrettyPlot
ProtDist
ProtPars
Syco
TFScan
TranSeq
Wobble
Union
MaskFeat
IsoChore
Kitsch
Listor
MSBAR
MakeNucSeq
MakeProtSeq
MarScan
Biosed
Btwisted
DotMatcher
SeqMatchAll
SeqRetSplit
SigCleave
ShowFeat
ShowOrf
ShowSeq
GetOrf
HelixTurnHelix
Iep
InfoAlign
Geecee
Garnier
AntiGenic
BackTranAmbig
BackTranSeq
Banana
FuzzTran
FuzzPro
FuzzNuc
Freak
Fitch
ExtractSeq
ExtractFeat
Est2Genome
ETandem
EQuickTandem
EInverted
Drawtree
Drawgram
DotPath
Dottup
DescSeq
DeGapSeq
DReg
DNAPenny
DNAPars
Cusp
DNAComp
DNADist
Consense
Cons
CompSeq
Codcmp
Clustalw
Chips
Water
Checktrans
Charge
Chaos
SuperMatcher
TrimSeq

bioserv.rpbs.jussieu.fr

BasicBuilder
Mead_Pot
HCA
Automat
psiBlast
ExtractTurn
PredAcc
Substitution
Clustalw
ASA
CysPred
HBonds
Jnet
Mead_PKa
NetAsa
PSea
psiPred
Stride
ASAfromPDBid

bioweb.pasteur.fr

Melting

castor.brc.mcw.edu

keywordToGene
rgdIdToGOID
LLToRgdId
pmidFromRgd
spFromRgd
gbNucleotideFromRgd
symbolFromRgd
gbProteinFromRgd
genbankToGene

ccgb.umn.edu

MtKeyword
GI2ScientificName

ccrc.uga.edu

ccrctest
Glyde2svg

cnio.es

runFASSFromClustalw
runFASSFromMSF
fromiHOPtoMOBY
getRelatedSymbolsXML
getRelatedSymbols
searchOrGuessSymbolIdFromInput
getSymbolInfoXML
getSymbolInfo
getSymbolDefinitionsXML
getSymbolDefinitions
getSymbolInteractionsXML
getSymbolInteractions
getPubMedXML
getPubMed
runDecypherBlastn
runDecypherBlastx
runISS
runFunCUT
runISSComplete
runNCut
runOFunCUT
fromFunCUTtoDASGFF
runMBFromMSF
runMB
runFASS
runSM
runSQUARE

cshl.edu

getArabidoposisAMIRNA
getArabidoposisAMIRNA2

edu.purdue.discoverypark.ionomics

PiiMS_Test

eva.mpg.de

EvocGetDIGDescriptionFromID
EvocRetrieveCDNA
EvocID2Name
EvocRealizeCDNA
EvocName2ID

genome.imim.es

fromMetaAlignmentsToTextScoreMatrix
runPhrap
fromGenericSequenceToFASTA
fromMetaAlignmentsToScoreMatrix
fromFASTAToDNASequence
fromFASTAToAminoAcidSequenceCollection
fromFASTAToGenericSequenceCollection
fromGenericSequenceCollectionToFASTA
runGFF2JPEG
fromFASTAToDNASequenceCollection
runGeneIDGFF3
filterSequencesByLength
runGeneIDGFF
runPhrapWithQualityData
runDustFASTA_NA_multi
filterSequencesAndQualityDataByLength
fromFASTAToAminoAcidSequence
runSGP2GFF
runRepeatMaskerCollection
runRepeatMasker
runDustCollection
runDust
runCrossMatchToScreenVectorCollection
runCrossMatchToScreenVector
runPhredCollection
runPhred
runSOTAClustering
runMultiMetaAlignmentGFF
runMatScanGFFCollectionVsInputMatrices
runMatScanGFFCollection
runMemeText
translateGeneIDGFFPredictions
runMetaAlignmentGFF
getOrthologousUpstreamSeqFromEnsembl
runMultiPairwiseMetaAlignmentGFF
runMultiPairwiseMetaAlignment
runKMeansClustering
runMemeHTML
runMatScanGFF
getUpstreamSeqFromEnsembl
runMultiMetaAlignment
runMetaAlignment

heaven.mshri.on.ca

GridService

iant.toulouse.inra.fr

iANTNetBlastFromXml
iANTBlastFromXml
BlastToIds
InterproAnnotation
iANTblastxUniprot
iANTMultalinNucleic
iANTMultalinNucleicFromXml
iANT_seg
iANT_filter
iANT_tmpred
iANTblastxUniprotFromXml
BlastToLocus_tags
BlastToList
Cap3
iANTtblastnPlantEstFromXml
iANTFastaToXml
iANT_entry_dbToFasta
iANTFastaReformat
iANT_entryToFasta
Cap3FromXml
iANTMultalinProteicFromXml
iANTautoSNP
iANTMultalinProteic
iANTblastxSwissProtFromXml
iANTblastxSwissProt
iANTtblastnPlantEst
iANTNetBlast
iANTBlast
iANTXmlToAccessions
iANTPatScan
iANTPatScanFromXml

icapture.mrl.ubc.ca

ObjectUnion
ObjectIntersection

icapture.ubc.ca

Gene2Ontology
Gene2PubMed

imb.uq.edu.au

IMB_Get_MaximallyRepresentativeCluster

inb.bsc.es

getEntryFromCATH
runEmbossTmapFromSequence
getPDBIDsFromUniprot
runNCBIFormatdb
runNCBIBlastAgainstDB
runNCBIBlastnXML
runTFasty
runNCBIBlastpXML
runNCBITBlastxXML
runEmbossIepFromSequence
textQueryUniprot
getPersistentFile
runWUTBlastn
runWUTBlastx
runMuscleFromSequences
getUniprotIDsFromAccession
fromGenericToAminoAcidSequence
getHomologiesFromEnsembl
removeDuplicatedObjects
runEmbossCpGplotFromSequence
runEmbossCpGreportFromSequence
runNCBITBlastx_2Seqs
getAminoAcidSequence
getNucleotideSequence
fromFastaToGenericSequence
parseRulesFromMotif
fromFastaToCommentedAASequence
textQueryOMIM
getUniprotIDsFromGOTerm
getEntryFromProdom
runNCBITBlastn_2Seqs
runWUBlastn_2Seqs
plotArrayXYData
runEmbossPepinfoFromSequence
runEmbossPepstatsFromSequence
runEmbossChargeFromSequence
runNCBITBlastx
runEmbossConsFromAlignment
runEmbossCodcmpFromTables
runEmbossAntigenicFromSequence
parseMatrixFromMotif
runEmbossTranseqFromSequence
runEmbossWaterFromSequences
runEmbossSigcleaveFromSequence
runEmbossTFscanFromSequence
runNCBIBlastp
loadPersistentFile
fromNDBTextToPDBText
runHMMSearchAgainstDB
runHMMSearchAgainstSeqs
runNCBIBlastn
runTcoffeeFromSequences
runWUBlastn
runWUBlastp
runWUBlastx
runTcoffeeFromProfiles
runTcoffeeEvaluateAlignments
runTFastx
runNCBIBlastxXML
runNCBIBlastx
runHMMBuild
runHMMPfam
runFastaForAminoAcids
runFastaForNucleotides
runFastx
runFasty
getCATHHierarchyCodesFromPDBID
parseENSEMBLSliceInformation
fromGenericToNucleotideSequence
frommmCifToPDBText
getSequencesFromENSEMBLHomology
fromXYDataTextToArrayFloat
runNCBIBlastn_2Seqs
getTermsFromProduct
runNCBITBlastnXML
getProdomDomainsFromUniProt
runClustalwFast
runPs_scanAgainstProsite
getGraphFromTerm
getEntryFromProsite
getEnsemblIDsFromUniprot
getCDSSequence
getDocumentationFromProsite
runWUTBlastx_2Seqs
runNCBIBlastp_2Seqs
searchInterPro
frommmCifToNDBText
runWUBlastp_2Seqs
browseCATHClassification
runPhylipProtpars
runPhylipProtdist
runPhylipNeighbor
runPhylipDnapars
runPhylipDnaml
runPhylipDnamlk
runPhylipDnadist
getPrositeAnnStructureFromPDBID
runPhylipKitsch
runPhylipDnapenny
runPhylipFitch
runEmbossPepcoilFromSequence
displayDomainsFromAnnStructure
runEmbossPepwindowFromSequence
runEmbossPepwindowallFromSequences
runEmbossRestrictFromSequence
parsePatternFromMotif
getSequenceByRegionFromENSEMBL
parseMWfromMWAnnotatedAASequence
runNCBITBlastn
runClustalwFull
runWUTBlastn_2Seqs
getPrositeAnnStructure
getUniprotAccessionsFromID
getCrossReferencesInUniprot
getCATHDomainsFromPDBID
getEntryFromPDB
fromNDBTextTommCif
searchBLOCKS
runWUBlastx_2Seqs
refineTextQueryOMIM
getCodonTableFromEmboss
runPs_scanAgainstSequence
getGOTerm
getHSSPIDsFromUniprot
runNCBIBlastx_2Seqs
multiplotArrayXYData
fromPDBTextToNDBText
fromGenericSequenceToFasta
runEmbossCuspFromSequence
runEmbossPatmatdbFromSequence
runEmbossPatmatmotifsFromSequence
runEmbossDigestFromSequence
runEmbossEmowse
runEmbossEquicktandemFromSequence
runEmbossFindkm
runEmbossGetorfFromSequence
runEmbossNeedleFromSequences
runEmbossOctanolFromSequence
runEmbossPatmatdb
getEntryFromFSSP
getEntryFromDSSP
getEntryFromGenBank
getEntryFromEMBL
getEntryFromSwissProt
getEntryFromTrEMBL
getEntryFromUniProt
getEntryFromPfam
getEntryFromRefSeq
fromPDBTextToDSSP
runProCheckFromPDBText
getAtomsFromPDBID
getmmCifFileFromPDBID
fromPDBTextTommCIF
runBlat
runGenewise
runBlast2gene
getEntryFromSCOPDomainID
fromGenericSequenceCollectionToFasta
parseBlastIDs
fromFastaToCommentedNASequence
parseFeatureAASequenceWithArticle
getFeatureAASequenceFromUniprot

inblosam.com

extractGeneProteinNames

itdinges.mine.nu

helloWorld
Echo

lipm-bioinfo.toulouse.inra.fr

EMBOSS_vectorstrip
FASTA_NA_multiToFASTA_NACollection
MsfToPsiblast
MsfToPhylip
EMBOSS_transeq
ObjectCollectionToList
ListToStringCollection
FASTA_AA_multiToFASTA_AACollection
iANT_entry_dbToiANT_entryCollection
StringToList_Text
ObjectCollectionToStringCollection
EMBOSS_water

llama.med.harvard.edu

Uetz
Ito2001
CCSBHI1
Giot
Stelzl
LeeTF
CorrelatedCoexpression
Zhang
Phosphorylome
Shyamsundar
Johnson
Tong2004
LCI
Su
GavinSpoke
Harbison

mapman.mpimp-golm.mpg.de

getPMCIDsByAGI
getBinCodeByAGI
getBinCodeBySGN
getCorrelationByAGI
getBinCodeByChlamyProteinID
getBinCodeByUniProtKB_id

metnetdb.org

getMetNetComments
getMetNetPathways

migale.jouy.inra.fr

Water

mips.gsf.de

id2link
getProteinSequence
getContigsByFreeText
getElementsOfType
getEmblDNASequence
getClonesByName
MIPSBlastXMLClickableImage
extractElementNames
MIPSBlast
getProtLocDBImagesByAgi
getTairRefsByAgi
BlastRawSeqVsArabiContigs
getElementAnnotation
getUnsplicedSequence
getAGILocusCodes
getGeneticElementsOfType
getJICGeneTrapImageByAgi
getAllGeneticElements
getClonesForChromosome
MIPSBlastBetterE13
MIPSBlastXML
getElementsForContig
getElementsByFreeText
getMIPSArabidopsisProteinSequence
getMIPSFastaProteinSequence
extractAGILocusCodes
getClonesByFreeText
BlastRawSeqVsArabiProteincoding
getEmblAccession
getTmHMMforAGI
extractElementSequences
getLinksToEntriesInPlaNetDBs
getElementsByName
getElement
getMIPSArabidopsisAnnotationAsGFF3
getContigsByName
getSplicedSequence
getGeneticElementNameByFreeText
getCosBBHForGene
BlastFastaVsArabiProteincoding
getAramemnonRefsByAgi
getTmhmmPrediction
getABRCMutantImagesByAgi
getRikenRAPIDImageByAgi
getAtNoPDBImageByAgi

mmb.pcb.ub.es

runPSIBlastpFromAminoAcidSequence
getAminoAcidSequenceFromPDB
parseAminoAcidSequenceFromPDBText
runPHDFromAminoAcidSequence
getComponentsFromPDBId
runPHDFromBLASTText
runPMUTHotSpotFromBLASTText
parseAccessibilityFromPHDText
getHeaderFromPDB
runPHDFromFASTA
runPMUTHotSpotFromFASTA
runBindProteins
parseSecondaryStructureFromPHDText
getActiveSiteInterfaceFromPDBId
getLigandIdFromPDBId
runPMUTHotSpotFromAminoAcidSequence
runEmbossTFscan_GFF_FromFasta
runEmbossCpGreport_GFF_FromFasta
getPDBIdsFromLigandId
getPDBLigand
getPDBLigandStructure
getProtProtInterfaceFromPDBId
getStructureFromPDB
parseFeatureAASequenceFromFSOLVText
parseGFFFromFeatureAASequence
parseMultipleAlignFromBLASTText
parsePropertySequenceFromFSOLVText
parsePropertySequenceFromPMUTText
plotFeatureAASequence
runFSOLVFromPDBText
runPSIBlastpFromFASTA
showFSOLVonStructure
showPMUTonStructure
runProStar_GFF_FromFasta
runSimpleTfbs
showPDBFromFasta
show3DFeature
getPDBFromTransfac

mncn.csic.es

getCoordinatesOfTaxon

moby.ucalgary.ca

TrimSequenceVector
ABIChromatogramToDNASequence
TrimSequenceEndsOfAmbiguities
TrimSequencePolyATail
ReverseComplementSequence
RemoveSequenceRegion

mpiz-koeln.mpg.de

EBI_InterproScan
RPSBlast
get_other_database_accessions_by_database_accession
get_GO_Term_by_Database_ID
get_go_information_by_go_term
get_agi_code_by_keyword
Blast_Against_Proteins_With_Exp_Verified_GO_Term
GetInAndOrthologsFromRefSeq
buildMultipleAlignmentWithMAFFT
GetConservedDomainsFromFastaAlignment
BuildPhylogeneticTreeFromFastaAlignment
RunSifter
EBI_WU_Blast
getAFAWEProteinIDByGOTerm
Blast_Against_RefSeq_Complete_Sequenced_Organisms
getAFAWEProteinIDBySequenceAndOrganism

narcisse.toulouse.inra.fr

NarcisseGetSequencesFromRegions
NarcisseBlast
NarcisseGetProteinsFromLocus_tags
NarcisseGetAnnotationsFromLocus_tags
NarcisseGetUpstreamFromLocus_tags
NarcisseGetLocus_tags
NarcissePsiBlast
NarcisseGetLocus_tagsFromRegions

nugo-r.bioinformatics.nl

AffyArrayNormalization
AffyArrayNormalization_poll
AffyArrayNormalization_submit
AffyArrayQualityAnalysis
AffyArrayQualityAnalysis_submit
AffyArrayQualityAnalysis_poll

orygenesdb.cirad.fr

getGeneByGOTerm
getGeneByKeywords
getGeneWithFST
searchBySequence

oryzataglines.cirad.fr

getGermplasmByPhenotype

plantenergy.uwa.edu.au

SUBA_AGI2PredLocation
SUBA_AGI2Publications
SUBA_PredLocation2AGI
SUBA_CallLocation2AGI
SUBA_Location2Publications
SUBA_AGI2CallLocation

plantgdb.org

VMatchForArabidopsis

rings.t.soka.ac.jp

RINGStest
getSimilarGlycans
getSimilarGlycansWithScore
getSimilarGlycansWithScoreFromKCF

samples.jmoby.net

TextExtract
Mabuhay
TestServiceNotes
ConcatSequences
ConcatSequenceSet
HelloBiomobyWorld

sapporo.genomics.purdue.edu

LexiSearch
PlantspBlast
FeatureScan

schematikon.org

RetrieveMotifSupport
PDBtoMotifID
RetrieveMotifNeighbours
RetrieveMotifVoronoiNeighbours
RetrieveStructureSegmentAminoAcidSequence
RetrieveStructureAnnotation
RetrieveSegmentAttributes
PDBtoSegmentID

scri.ac.uk

ConvertAAtoFASTA_AA

seedgenes.org

SeedGenesEmbryoImageCollectionByAgiCode

sgn.cornell.edu

GetSGNUnigene
GetSGNUnigeneConsensusSequence

sirius.brc.mcw.edu

genbankToGene

soaplab.icapture.ubc.ca

seqretPROTEINRefNBRF2FASTA
seqretPROTEINRefGCG82FASTA
seqretPROTEINFASTA2NBRF
seqretPROTEINRefFASTA2FASTA
seqretDNAMEGA2FASTA
seqretDNANCBI2FASTA
seqretDNARefSTADEN2FASTA
seqretPROTEINRefFASTA2SWISS
seqretDNAFASTA2MEGA
seqretPROTEINRefTEXT2FASTA
seqretPROTEINNEXUSNON2FASTA
seqretPROTEINMEGA2FASTA
seqretDNAFASTA2MSF
seqretDNAFASTA2GCG8
seqretDNARefFASTA2PIR
seqretPROTEINPHYLIP2FASTA
seqretDNAFASTA2IG
seqretPROTEINRefGCG2FASTA
seqretDNAFASTA2NEXUSNON
seqretPROTEINRefFASTA2TREECON
seqretPROTEINRefIG2FASTA
seqretDNARefMSF2FASTA
seqretDNAFASTA2RAW
seqretDNARefFASTA2NCBI
seqretPROTEINJACKNIFER2FASTA
seqretDNARefFASTA2STADEN
seqretDNARefFASTA2STRIDER
seqretPROTEINFASTA2NEXUS
seqretDNAFASTA2NEXUS
seqretPROTEINTREECON2FASTA
seqretDNARefFASTA2GENBANK
seqretPROTEINRefFASTA2JACKKNIFERNON
seqretDNARefFASTA2NEXUSNON
seqretPROTEINRefFASTA2NEXUS
seqretPROTEINGEN2FASTA
seqretPROTEINJACKNIFERNON2FASTA
seqretDNARefTEXT2FASTA
seqretDNAMSF2FASTA
seqretPROTEINCODATA2FASTA
seqretDNARefTREECON2FASTA
seqretPROTEINNCBI2FASTA
seqretDNARefCLUSTAL2FASTA
seqretDNAFASTA2NBRF
seqretPROTEINTEXT2FASTA
seqretDNARefFASTA2ACEDB
seqretDNANEXUS2FASTA
seqretPROTEINRefFASTA2GENBANK
seqretDNAACEDB2FASTA
seqretDNAEMBL2FASTA
seqretDNARefFASTA2EMBL
seqretPROTEINNEXUS2FASTA
seqretDNAFASTA2PHYLIP
seqretDNASWISS2FASTA
seqretPROTEINFASTA2TREECON
seqretDNAIG2FASTA
seqretPROTEINRefEMBL2FASTA
seqretPROTEINEMBL2FASTA
seqretDNARefNEXUSNON2FASTA
seqretDNAGCG82FASTA
seqretPROTEINFASTA2CLUSTAL
seqretDNARefRAW2FASTA
seqretPROTEINRefFASTA2EMBL
seqretPROTEINSWISS2FASTA
seqretDNAFASTA2SWISS
seqretDNARefGEN2FASTA
seqretDNARefFASTA2CLUSTAL
seqretPROTEINRefFASTA2STADEN
seqretPROTEINFASTA2MEGA
seqretDNAFASTA2ACEDB
seqretPROTEINSTRIDER2FASTA
seqretDNARefPHYLIP2FASTA
seqretDNAFASTA2EMBL
seqretPROTEINFASTA2NEXUSNON
seqretDNARefMEGA2FASTA
seqretDNATREECON2FASTA
seqretDNASTRIDER2FASTA
revseqProteinRefFASTA2FASTA
revseqProteinFASTA2FASTA
revseqDNARefFASTA2FASTA
revseqDNAFASTA2FASTA
seqretPROTEINRefJACKNIFERNON2FASTA
seqretDNARefFASTA2JACKKNIFER
seqretPROTEINRefNCBI2FASTA
seqretDNARefFASTA2NBRF
seqretDNAFASTA2TEXT
seqretDNARefFASTA2NEXUS
seqretDNARefJACKNIFER2FASTA
seqretPROTEINRefFASTA2IG
seqretPROTEINGCG82FASTA
seqretDNACODATA2FASTA
seqretPROTEINRefSWISS2FASTA
seqretDNAFASTA2GCG
seqretDNARefFASTA2GCG
seqretDNARefFASTA2JACKKNIFERNON
seqretPROTEINFASTA2GCG8
seqretPROTEINCLUSTAL2FASTA
seqretDNAFASTA2JACKKNIFER
seqretDNARefGCG2FASTA
seqretPROTEINRefNEXUSNON2FASTA
seqretDNAPIR2FASTA
seqretDNANBRF2FASTA
seqretPROTEINFASTA2JACKKNIFERNON
seqretPROTEINMSF2FASTA
seqretDNASTADEN2FASTA
seqretPROTEINRefFASTA2PIR
seqretPROTEINFASTA2STRIDER
seqretDNAFASTA2PIR
seqretPROTEINFASTA2NCBI
seqretPROTEINRefRAW2FASTA
seqretDNARefPIR2FASTA
seqretPROTEINRefPIR2FASTA
seqretPROTEINRefF